Protein Info for PGA1_c27920 in Phaeobacter inhibens DSM 17395

Annotation: N-acetylmuramic acid 6-phosphate etherase MurQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 PF13580: SIS_2" amino acids 56 to 180 (125 residues), 38.4 bits, see alignment E=1.2e-13 PF01380: SIS" amino acids 129 to 222 (94 residues), 41.6 bits, see alignment E=1.1e-14

Best Hits

Swiss-Prot: 39% identical to MURQ1_BACLD: N-acetylmuramic acid 6-phosphate etherase 1 (murQ1) from Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46)

KEGG orthology group: K07106, N-acetylmuramic acid 6-phosphate etherase [EC: 4.2.-.-] (inferred from 60% identity to sil:SPO1840)

Predicted SEED Role

"N-acetylmuramic acid 6-phosphate etherase"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.2.-.-

Use Curated BLAST to search for 4.2.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EQ88 at UniProt or InterPro

Protein Sequence (313 amino acids)

>PGA1_c27920 N-acetylmuramic acid 6-phosphate etherase MurQ (Phaeobacter inhibens DSM 17395)
MGSRSDHSPKTGISAQAEAQPTAQTETLHPDAQGLDLRADAEILDTLLTGQLRALEAVAD
ARPAIAAGATLLTNSLHNGGHLHYAAAGSSALMALADGAELPGTFGISADQISIHMAGGI
PADGRMPGHTEDDDEAGAKAAATVAANDVVIALSASGSTPFPMGFARTAQAAGAKVIAIA
NNANTPLLNLADVAICLPTPPEVIAGSTRMGAGTAQKAALNMMSTLAGIRMGHVMDGMMV
NLIADNAKLRQRAIRIVSTLTQQDAEAAARALDQTGGAVKPAILLLQGAASPTAADTLLR
HYKDNLRAALAQV