Protein Info for PGA1_c27860 in Phaeobacter inhibens DSM 17395

Annotation: peptidase S15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 PF02129: Peptidase_S15" amino acids 17 to 264 (248 residues), 221.2 bits, see alignment E=4e-69 TIGR00976: hydrolase CocE/NonD family protein" amino acids 17 to 494 (478 residues), 232.5 bits, see alignment E=6.2e-73 PF00326: Peptidase_S9" amino acids 58 to 150 (93 residues), 30.3 bits, see alignment E=6e-11 PF00561: Abhydrolase_1" amino acids 61 to 142 (82 residues), 32.2 bits, see alignment E=1.8e-11 PF08530: PepX_C" amino acids 294 to 512 (219 residues), 127.1 bits, see alignment E=1.9e-40

Best Hits

KEGG orthology group: K06978, (no description) (inferred from 70% identity to sit:TM1040_0391)

Predicted SEED Role

"Mll5128 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EZT3 at UniProt or InterPro

Protein Sequence (662 amino acids)

>PGA1_c27860 peptidase S15 (Phaeobacter inhibens DSM 17395)
MPMEITGVEHLWIPLPDGRRLAARMWRPAAEGRYPAILEYLPYRKRDGTAPRDATTHPVF
AAEGYVCLRVDIAGTGDSEGLFDDEYSEQELSDGEAVLAWLAAQACCDGNIGMIGISWGG
FNGLQLAARQPEALKAVVSVASTVDRYADDIHFMGGCLLSDNANWASQMLAYQTRPLDPE
LRPDWREAWVERIEALPFMAADWLSHAQRDDFWKHGSVCEDWSAIQAPVLAITGWADAYV
NAPPALAANMQAPAKALIGPWEHRYAHISKLEAHDFHGEVLRWFDRWLKGADSGAEALPD
YRTYMQEHFNPTKENKPRQGRWVAEAAWPSPNVQEVTHHLGPQGLLQAAPGAGEVVVSNP
ATVGAAGGYFCAGMRIDNELPGDQAGDDALSACFDTAPLDIPLELLGRARLRLAFSVDKP
VAQVMARLCDVAPNGVSQRISYRGRNLCHDESHERAEALVPGKRYEVEFALNECAHHLRA
GHKLRLALSTSYWPIVWPSPEPVALTLHLEGCALILPERSLAEEVEAQAPSAARDYPTYQ
AEVTRAPSGTSNIYEEADGTQVLETFDDYGAAIDPVHGMEVGSHVAMRYAVHPDDPASAT
FTSQWRFTFARGDWQVQVDTDNEMRGDREEFHLWRRVVATEGAEQTEVCVKEWSESLPRD
CL