Protein Info for Psest_2795 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 PF20772: TACO1_YebC_N" amino acids 5 to 70 (66 residues), 89 bits, see alignment E=2.2e-29 PF01709: Transcrip_reg" amino acids 78 to 228 (151 residues), 164.2 bits, see alignment E=2.1e-52

Best Hits

Swiss-Prot: 82% identical to Y2212_PSE14: Probable transcriptional regulatory protein PSPPH_2212 (PSPPH_2212) from Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)

KEGG orthology group: None (inferred from 98% identity to psa:PST_1582)

Predicted SEED Role

"FIG033889: YebC paralog in Betaproteobacteria"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMR5 at UniProt or InterPro

Protein Sequence (232 amino acids)

>Psest_2795 Uncharacterized conserved protein (Pseudomonas stutzeri RCH2)
MGAQWKAKHKEAAANAKGRIFGKLSKEIMIAARSGADPDMNPRLRLVVEQAKKASMPKDT
LERAIKKGAGLSGEVVHYERTLYEGFAPHQVPLIVECLTDNVNRTVAEIRVLFRKGQLGS
SGSVSWDFDHVGMIEAAPQGDADAEMAAIEAGAQDFEAADEGATLFITEPTDLDAVCKAL
PEFGFTVQSAQLGYRPKNPVSLSGAELEEVEAFLEAIDAHDDVQNVYVGLAG