Protein Info for HP15_2671 in Marinobacter adhaerens HP15

Annotation: permease of the drug/metabolite transporter (DMT) superfamily-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 125 to 143 (19 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 218 to 238 (21 residues), see Phobius details amino acids 247 to 266 (20 residues), see Phobius details amino acids 272 to 290 (19 residues), see Phobius details PF00892: EamA" amino acids 15 to 139 (125 residues), 61.5 bits, see alignment E=5e-21 amino acids 156 to 289 (134 residues), 38.5 bits, see alignment E=6.1e-14

Best Hits

KEGG orthology group: None (inferred from 72% identity to maq:Maqu_2902)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PJS1 at UniProt or InterPro

Protein Sequence (295 amino acids)

>HP15_2671 permease of the drug/metabolite transporter (DMT) superfamily-like protein (Marinobacter adhaerens HP15)
MRSLFYSFFVPALFVWLWSTGFIGAKYGLPFAEPFTLLLIRMLLTLVVLGALAWVMKTRW
PGWRGAGHLAVTGMLVHGCYLGGVYYAIQDGMASGIVSLIVGLQPLVTAAAAVAILKETV
SGRQWIGLILGLVGVALVLLEKFGMSGQASGFSPWSLLWAGFALAGISMGTVYQKRFGAS
ADLVAGTLIQFAAAAALFAIGAFALETREVEWSLQLQLSMAWLVIGLSTGAVLLLMWLIR
QGAASQVASLFYLVPPVTALEAYLLFDERLGGLAMTGGLIAIVGVALVATQKKPA