Protein Info for HP15_2605 in Marinobacter adhaerens HP15

Annotation: regulatory protein, LysR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details PF06980: DUF1302" amino acids 26 to 556 (531 residues), 75.6 bits, see alignment E=2.3e-25

Best Hits

Predicted SEED Role

"putative regulatory protein, LysR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PJK5 at UniProt or InterPro

Protein Sequence (556 amino acids)

>HP15_2605 regulatory protein, LysR (Marinobacter adhaerens HP15)
MMGTKMKRDNKNSTSIHRPWQRGLLASAVLAASVSVPQIASAEEDWLTKDWEVSGYIRQY
LSWNLENPTLIGPDGEQRDDYRYDLSMARTVGKLDLYRDFGNWRTKITGRISRESPTDYG
KDLQDVMDEWAATGGAAGSSVNLRDDVYDDEELREFWVQGDLTDSTNIKVGRQQVVWGET
DFFQLLDVVHGYDFRWRSFLEPENEELRKPLNMVNLTQQFYDLDGSLQVLYIPGKLNDGE
DRGNSYDVEGGRWANNPNKGITFASAPFGANVKYNYDHPDADMDDDSFGLRWSGLAGDWG
YSVGWFRGPNPNPVVNPNPATNPGQPQLQTGPYEGVYEGGATEAGEFIYPFIDVFGVTAN
NYFAGPDLVFSTELAYIPNAPYNVGIESIAEGPGCGFFPGFCGIEEKKLFRSMFRIDKQL
DLQDVLGTSRPSFFTVQLFNNWITDYEKEEQLVNLAGFGGETEEFSSIITAVLATNYAND
QINPSLAIGSDLTYGGGFVIPAVELAYGDHIRVRLEADIFFHEKDQERPLQGFNDTNLFG
YFSGNDQLLARLTYQF