Protein Info for Psest_2695 in Pseudomonas stutzeri RCH2

Annotation: Sugar phosphate permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 287 to 309 (23 residues), see Phobius details amino acids 318 to 336 (19 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details amino acids 384 to 403 (20 residues), see Phobius details amino acids 410 to 429 (20 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 315 (289 residues), 140.4 bits, see alignment E=1.1e-44 amino acids 293 to 428 (136 residues), 36 bits, see alignment E=6e-13 PF00083: Sugar_tr" amino acids 27 to 285 (259 residues), 120.8 bits, see alignment E=1.2e-38 PF06779: MFS_4" amino acids 38 to 196 (159 residues), 43.3 bits, see alignment E=4.8e-15

Best Hits

KEGG orthology group: K05548, MFS transporter, AAHS family, benzoate transport protein (inferred from 93% identity to psa:PST_1671)

Predicted SEED Role

"benzoate MFS transporter BenK" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPF9 at UniProt or InterPro

Protein Sequence (447 amino acids)

>Psest_2695 Sugar phosphate permease (Pseudomonas stutzeri RCH2)
MRKVDVHEVIDNARFNGFHWLVVCLCALLLIFDGYDLFIYGVVLPVIMKEWGLTPLEAGA
LGSYALFGMMFGALVFGTLADRIGRKMGIAICFVLFSSATVLNGFASTPTEFGVFRFLAG
LGCGGLMPNVVALMNEYAPKKLRSTLVAVMFSGYSLGGMLSAGLGIYMLPRFGWEAMFFA
AAVPLLLLPVIIWYLPESVGFLVRQGRTEQARALLNKVDPTRQLGANDELVMSDIKGKSA
SVLELFRDGRGVRTVSIWVAFFCCLLMVYALGSWLPKLMANAGYSLGSSLSFLLALNFGG
MAGAILGGWLGDRFNLSKVVVVFFAISVVSISLLGFKTPMPVLYTLIFIAGATVIGTQIL
LYATAAQFYGLSIRSTGLGWASGIGRNGAIVGPLLGGALLGINLPLQLNFMAFAVPGIIA
ALAMSVFAISSKRSTVAAPVVISAAKA