Protein Info for Psest_2667 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein involved in propionate catabolism

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF03972: MmgE_PrpD_N" amino acids 7 to 248 (242 residues), 239.2 bits, see alignment E=4e-75 PF19305: MmgE_PrpD_C" amino acids 268 to 439 (172 residues), 169.6 bits, see alignment E=5.8e-54

Best Hits

KEGG orthology group: None (inferred from 98% identity to psa:PST_1696)

Predicted SEED Role

"MmgE/PrpD family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GN11 at UniProt or InterPro

Protein Sequence (450 amino acids)

>Psest_2667 Uncharacterized protein involved in propionate catabolism (Pseudomonas stutzeri RCH2)
MSQHTRALTEFLAGLAYAQIPEPVLARTEDLFLDWLGSALASAGSHPIPLFERYAQKMGP
ADGPARILVNGQSSSAYFAALVNAASSHLVEQDDLHNSSVLHPATVVFPAALAAAQDLGK
SGRELLVASVAGYEAGIRIGEFLGRSHYRIFHTTATVGTLAAAVAVGKLMDFDQQQFTHL
LGSAGTQAAGLWEFLRDAADSKQLHTAKAAADGLLAAYLTADGLTGAQNILEGEQGMAAG
MSRDAEPSKLSDRLGTRWALAETSFKFHASCRHTHPAADALLALMQREGLGADDIASVTT
RVHQGAIDVLGRVTVPQTVHQAKFSMGTVLGLIALYGKAGLTEFHSHALSDPRVSTFREK
VSMTLDPEVDGAYPARWLGRVEVITADGRTLHGAIDEPKGDPGNTLSRAELEDKFRRLVQ
FSAARSDDEASVLIDTVWRLRELERLDALA