Protein Info for Psest_2621 in Pseudomonas stutzeri RCH2

Annotation: TadE-like protein.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details PF07811: TadE" amino acids 8 to 50 (43 residues), 46.1 bits, see alignment E=2e-16

Best Hits

KEGG orthology group: None (inferred from 64% identity to pba:PSEBR_a4089)

Predicted SEED Role

"Similar to TadZ/CpaE, associated with Flp pilus assembly" in subsystem Widespread colonization island

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMW7 at UniProt or InterPro

Protein Sequence (167 amino acids)

>Psest_2621 TadE-like protein. (Pseudomonas stutzeri RCH2)
MSRMRQHGAYTVEFAIVGLLFFVLMFGVLEMGRLLFTVNALNESARRGARLAAVCNIQDP
RILRRAIFNEAEQSGTSQLIGNLETSHLRLVYLNQDGAPVASPADTTGVTGYRAIRYVQL
RIEGFPFQLLIPTLQRVITLPTFQSTLPRESLGRHPEANVVPEITPC