Protein Info for Psest_2606 in Pseudomonas stutzeri RCH2

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 16 to 205 (190 residues), 71.5 bits, see alignment E=2.6e-23 PF13439: Glyco_transf_4" amino acids 16 to 205 (190 residues), 57.2 bits, see alignment E=5.7e-19 PF00534: Glycos_transf_1" amino acids 223 to 371 (149 residues), 101.8 bits, see alignment E=8e-33 PF13692: Glyco_trans_1_4" amino acids 226 to 357 (132 residues), 96.4 bits, see alignment E=4.8e-31

Best Hits

KEGG orthology group: None (inferred from 91% identity to psa:PST_1756)

Predicted SEED Role

"glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMV3 at UniProt or InterPro

Protein Sequence (436 amino acids)

>Psest_2606 Glycosyltransferase (Pseudomonas stutzeri RCH2)
MKILFLNAFYAPHIGGGAEVILRHLAEGLQRRGCEVAVLATGPDAGLDMQIQDGVRVYRA
SLANSYWHYTQQRPSSLARLGWHYRDRYNSEMRRHVREVIDREQPDIVVSNNLTGWSISA
WDEISAAGLPIVQVLHDLYLLCPKDTMFKRGKSCQRQCGLCSVLRLGHAGASSQVATVIG
VSRSVLERITAQGYFSRARQHVVHNSTPANPGQGSKPKRRSSHPLRFGYIGTLSENKGVG
WLIEQFQRLDIDARLDIAGRGKLDYEARLKAMADPKKVSFLGYCDSDEFMQSIDVLVVPS
LWAEPFGLVAVEGCANHLPVIASNMGGLPEIIRDECNGLLCSPDDPDSLGIAMLWLYIDG
ALRQKLASQARASVLPLLDMERMLDQYQSILHETLQGTRIHHEPEPADHPAPTRLESVGI
RQADIVDAGRRLAAAD