Protein Info for Psest_2603 in Pseudomonas stutzeri RCH2

Annotation: capsular exopolysaccharide family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 737 transmembrane" amino acids 31 to 55 (25 residues), see Phobius details amino acids 444 to 464 (21 residues), see Phobius details PF02706: Wzz" amino acids 15 to 106 (92 residues), 60.5 bits, see alignment E=5.6e-20 PF23607: WZC_N" amino acids 110 to 222 (113 residues), 114.2 bits, see alignment E=1.4e-36 PF13807: GNVR" amino acids 386 to 467 (82 residues), 95.2 bits, see alignment E=6.2e-31 TIGR01007: capsular exopolysaccharide family" amino acids 523 to 730 (208 residues), 164.2 bits, see alignment E=1.5e-52 PF10609: ParA" amino acids 542 to 661 (120 residues), 27.6 bits, see alignment E=6.9e-10 PF01656: CbiA" amino acids 544 to 716 (173 residues), 29.4 bits, see alignment E=2.5e-10 PF13614: AAA_31" amino acids 545 to 665 (121 residues), 46.7 bits, see alignment E=1.3e-15

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_1759)

Predicted SEED Role

"Tyrosine-protein kinase Wzc (EC 2.7.10.2)" in subsystem Colanic acid biosynthesis (EC 2.7.10.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.10.2

Use Curated BLAST to search for 2.7.10.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GP72 at UniProt or InterPro

Protein Sequence (737 amino acids)

>Psest_2603 capsular exopolysaccharide family (Pseudomonas stutzeri RCH2)
MTALTRSSLEYDADNRIDLAAIMRTAYDHKALIIAITGLFAALGVFYALIATPIYQATAM
IQIEPKKAAITGVPEISVRPDSVSQAVTEISLLKSRAVLGRAVEELKLYIVAKPRQFPVI
GGFMARRHDPATDGALAAPLFGFTSYAWGGEKLEVFQLDVPEAYLGMELTLTAGNAGDFS
LRDDEQQLILRGQVNQAVESQGFKVQIAELEARPGTEFLLVRNRPQTTALEYQDRLKVGE
AGKDSGIIYMSLEDPDPQLASRVLDEISRLYVSQNIQRSSAEAAQRLEFLRSQLPQVRKE
LEKAEAALNSYQTSSKSVDISIETKGVLDQIVALETQISELTLKRVDYDRLYTREHPTYR
TLMTQMNELQAQKAQLLKKVDALPMTQQELLRLKRDMEVTTQTYTLLMNQAQEQDILRAG
TIGNVRIIDNAYSMIEKPSKPVKPLVVAIAIFVGLLASAAVILLRQAFYRGVESPDAIEK
LGVPVYAGLPYSASQDQLNRSRKARDGKTRLLSLTEPTDLAVESLRSLRTSLKFAMLEAR
NKVLMITSPTPSVGKSFVSSNLAAVIAQTGQRVLLIDGDMRRGYLHNLFGMAPRNGLSDA
LASGLSLAEITNRTELKNLHFISAGFSAPNPSELLMHDNFSRLLREAEKLYDFIIIDTPP
VLAVTDAVLVAQQAGTNLLVARFGLSTSSQIDASKRRLGQNGVLLKGVILNAVKRKASTS
PYDSGAYGYYTYNTQQA