Protein Info for Psest_0256 in Pseudomonas stutzeri RCH2

Annotation: Predicted Zn-dependent peptidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00675: Peptidase_M16" amino acids 107 to 240 (134 residues), 26.2 bits, see alignment E=6.8e-10 PF05193: Peptidase_M16_C" amino acids 248 to 421 (174 residues), 122 bits, see alignment E=2.7e-39

Best Hits

KEGG orthology group: None (inferred from 92% identity to psa:PST_3994)

Predicted SEED Role

"FIG015287: Zinc protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGH9 at UniProt or InterPro

Protein Sequence (513 amino acids)

>Psest_0256 Predicted Zn-dependent peptidases (Pseudomonas stutzeri RCH2)
MNDFSALRNGLLGLLLVASFGLAGCDEGSKALPQPGEPVKQDVAREAAQPAVPTEEPATS
EKPRLESLAELGDQPLARRKLDIQSWQTAEGAKVLFVEARELPMFDLRLTFSAGSSQDGE
VPGLALLTNAMLNEGVEGKDVSAIARGFEGLGADFGNGSYRDMAVVSLRSLSAPDKREPA
LALFNQVIGQPTFPADSLQRIKNQLLAGFEFQKQNPGKLASLELFEQLYGDHPYAHPSEG
TPESVPGISVEQLREFHARAYAAGNAVIALVGDLSREEAEALAAEVSAALPEGPALPATP
TPKAPVAGKHHIDFPSNQSHLMLAQLGIPRGHPDYAALYLGNQILGGGGFGTRLMEEVRE
KRGLTYGIYSGFSPMRAEGPFMISMQTRAELTDGALELVQQLVRDYLAEGPSEAELQRSK
REIAGSFPLSTASNADIVGQLGSIGFYDLPLTYLEDFMGEVQALTVEQVKTAMNKHLQED
AFVIVTAGPSVEQQPLPPPTDKPVEQPSGVPEH