Protein Info for PGA1_c25880 in Phaeobacter inhibens DSM 17395

Annotation: putative DNA packaging phage protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 93 PF05135: Phage_connect_1" amino acids 1 to 89 (89 residues), 41.1 bits, see alignment E=1.1e-14 TIGR02215: phage conserved hypothetical protein, phiE125 gp8 family" amino acids 46 to 93 (48 residues), 42.2 bits, see alignment E=3.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DT75 at UniProt or InterPro

Protein Sequence (93 amino acids)

>PGA1_c25880 putative DNA packaging phage protein (Phaeobacter inhibens DSM 17395)
MITLEEAKAHCRVTPEETEFDGEIQIALDAAVDHLRSINVDVAADPFPPALKQAVLMLVA
HFFENKEAVTPEKAWFTPIGVDRLIAPYRGVSL