Protein Info for PGA1_c25800 in Phaeobacter inhibens DSM 17395

Annotation: Predicted RNA methylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 PF06325: PrmA" amino acids 88 to 181 (94 residues), 42.2 bits, see alignment E=7.5e-15 PF13649: Methyltransf_25" amino acids 100 to 200 (101 residues), 27.9 bits, see alignment E=3.2e-10

Best Hits

KEGG orthology group: None (inferred from 68% identity to rde:RD1_3699)

Predicted SEED Role

"Protein arginine N-methyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E3B3 at UniProt or InterPro

Protein Sequence (407 amino acids)

>PGA1_c25800 Predicted RNA methylase (Phaeobacter inhibens DSM 17395)
MLKTQSPNPVSLVTHAGRADAGTLVQLAKSASLGDGGVQTSRLLSQALRLDPHHHEAQVL
QERLHQTFVPRWHFPMLADQARNRAYAEAIAMKVKPGDIVLDIGCGAGLTAMLAARAGAK
HVYTCEQQPLIAQAARRVIADNGLSDRITVLSKWSHEIVIGVDMPEQADVVVSEIVDAVL
LGEGALDTLSHAMSALAKPGARAIPETGTLVAQLVESEALLQQWRPQAAEGFDLSAFHHL
ARVAQITPGDFKACGLRPLGPGTDLFQFDFTRPDVTPARSSQRLSCSHSGVVHAVFVSFE
MQLAPGIGLTNGLYSDGHWGRTAFLLDASRRLSPGDCLQVTAQHDAAALSVSVHDAEPAA
DRAEVWLQPAWRLEAEPSEPKPLAAVDYPVWTPTPGAPVEAPVRAYS