Protein Info for Psest_2586 in Pseudomonas stutzeri RCH2

Annotation: FimV N-terminal domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 910 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 472 to 493 (22 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 192 to 263 (72 residues), 97.4 bits, see alignment E=3.2e-32 PF14559: TPR_19" amino acids 563 to 603 (41 residues), 26.8 bits, see alignment (E = 5.4e-10) TIGR03504: FimV C-terminal domain" amino acids 866 to 909 (44 residues), 74.2 bits, see alignment 6.6e-25

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 78% identity to psa:PST_1777)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GP55 at UniProt or InterPro

Protein Sequence (910 amino acids)

>Psest_2586 FimV N-terminal domain (Pseudomonas stutzeri RCH2)
MVRVRNLVLAIAAATALTTEMAHALGLGEVTLQSSLNQPLIAEIELLDAKSLAPGEVIPV
LASLEEFNRAGIDRQYFLTDLKFTPVLRPNGKSVIQVSSSKPVREPYLNFLVEVLWPNGR
LLREYTLLLDPPLYSPETAAAAAPQLPISAPAPRAVEPARPAPVRSAAASPASVATAAPT
QDGSQYKTSARDTLWDIAERNRRSGTVHQTMLAIQDLNPDAFIDGNINRMKSGQVLRLPD
AQQISKRSQGEAIAQVAEQNAAWRQGRNAAVAGSRQLDATRRTEAGDAPSRSDTGDNLRL
VAADAGKSTAGSDTGSGDSGKALRDKLAVTQESLDSSRRENDELKDRLNDLQGQLEKLQR
LMQLKDDQLAKLQVQLGAEGQAPAAIDTAGQQQPSVAADDARSAQDRASGTGADSEVDST
PTNQQEPAPVAAPAPVERPAAAKPAPKPAPAKPVAPVEPEPKGLIDDLLSNTLLLGAVGG
GALLLLLVGLMALSRRNAMKEAELQESLMAVDTVDDLRVGTPAFVDIGQEQPEPAPFQTS
SAAAPEELAGTTGDALAEADIYIAYGRFNQAAELLQNALNDEPQRSDLRLKLMEVYAELG
NREGFARQEAELREIGGAAMEVEQLKHKYPAMVTVAGASAAAVAATQLDVDSFDLDDLQL
DDPAPLAAGQDLDDAFDLSLDDLDIDLSDKAQSAAPVDQPFNFDDLSLDEPEAGRDVQPA
ASDFSFDLEEEASVPDAKRDDFSDFSFDLDSEKNTAATDTEFSLSLDEESPVAPAAMEND
ELDFELAEPTGTSNDELPDGFDISLDEPEFEAQPNGFAEQLSEVEADLDNLSRDLQEPAS
ATAGSSADGASDDDFDFFSDTDETTTKLDLARAYIDMGDAEGARDILDEVISEGSDAQQQ
EARDMLAKLA