Protein Info for Psest_2584 in Pseudomonas stutzeri RCH2
Annotation: Phosphoribosylanthranilate isomerase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 86% identical to TRPF_PSEU5: N-(5'-phosphoribosyl)anthranilate isomerase (trpF) from Pseudomonas stutzeri (strain A1501)
KEGG orthology group: K01817, phosphoribosylanthranilate isomerase [EC: 5.3.1.24] (inferred from 86% identity to psa:PST_1779)Predicted SEED Role
"Phosphoribosylanthranilate isomerase (EC 5.3.1.24)" in subsystem Auxin biosynthesis or Tryptophan synthesis (EC 5.3.1.24)
MetaCyc Pathways
- superpathway of aromatic amino acid biosynthesis (18/18 steps found)
- superpathway of L-tryptophan biosynthesis (13/13 steps found)
- superpathway of chorismate metabolism (44/59 steps found)
- L-tryptophan biosynthesis (6/6 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Phenylalanine, tyrosine and tryptophan biosynthesis
Isozymes
No predicted isozymesUse Curated BLAST to search for 5.3.1.24
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0GMT5 at UniProt or InterPro
Protein Sequence (207 amino acids)
>Psest_2584 Phosphoribosylanthranilate isomerase (Pseudomonas stutzeri RCH2) MPVVRSKICGITRVEDALAAAHAGADAIGLVFYSKSPRAVSVQQAREIIAALPPFVTTVG LFVNASRCEINEILDAVALDALQFHGDETPAQCEGFHRPWFKALRVGGDEDVAGQVARYV NASGILLDTFVAGVPGGTGERFDWSLIPPGLTKPLILAGGLTAENVQQAIAEVRPYAVDV SGGVEASKGIKDAAKVQAFVERVRSAM