Protein Info for Psest_2576 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF11356: T2SSC" amino acids 23 to 147 (125 residues), 57.2 bits, see alignment E=8.7e-20

Best Hits

KEGG orthology group: K02452, general secretion pathway protein C (inferred from 78% identity to psa:PST_1787)

Predicted SEED Role

"General secretion pathway protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GP43 at UniProt or InterPro

Protein Sequence (214 amino acids)

>Psest_2576 hypothetical protein (Pseudomonas stutzeri RCH2)
MPLLGKLRNYRRYAPLTISTVLLCLFAVYLAMQIEQWMLLSRAPAPTDIYEQGTANPGGP
DMQRLEILFGSAAPTDAMAPSVAASGFTLRGSFVHVEPQRSSAIVQVDGQPPRLYWQGEE
LSGGVSLHKVYPDRVELLRNGTVEVLHFPQIRSPSYVPDALSDTPYQDEAPYAEPSDEET
QLMQQQMDTLRQQLEDAVNQSDAAPANDQPMEDD