Protein Info for HP15_2445 in Marinobacter adhaerens HP15

Annotation: protein yhbJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 PF03668: ATP_bind_2" amino acids 3 to 287 (285 residues), 328.3 bits, see alignment E=2.1e-102

Best Hits

Swiss-Prot: 87% identical to Y2718_MARHV: Nucleotide-binding protein Maqu_2718 (Maqu_2718) from Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)

KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 87% identity to maq:Maqu_2718)

Predicted SEED Role

"Hypothetical ATP-binding protein UPF0042, contains P-loop"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PHS1 at UniProt or InterPro

Protein Sequence (296 amino acids)

>HP15_2445 protein yhbJ (Marinobacter adhaerens HP15)
MVMKLIIVSGRSGSGKSTALHVLEDLGFYCIDNLPIGLLFPLTREAASQTRPGRLGKMAV
SIDARNLSGELANFEEIYRRLQETGVTVEIIFLDADEQSLLQRFHATRRKHPLSDDRTSL
REAITSEKKLLEPLSKLSDLYVNTTGMSMYELRDMVKQRVVGRKDQELALLFQSFGFKHG
VPLDSDYVFDVRCLPNPYWDTSLRKYVGTDQPVIEFLEKEPASRKMIEDLKSFLDTWLPS
FADSNRSYMTISIGCTGGQHRSVYVCEQLGEYFRQRYSNVQVRHTELPHLQTREEI