Protein Info for Psest_2518 in Pseudomonas stutzeri RCH2

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 56 (19 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 202 to 222 (21 residues), see Phobius details amino acids 242 to 261 (20 residues), see Phobius details PF09678: Caa3_CtaG" amino acids 53 to 265 (213 residues), 140.3 bits, see alignment E=3.5e-45

Best Hits

KEGG orthology group: None (inferred from 70% identity to pmk:MDS_2463)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNV0 at UniProt or InterPro

Protein Sequence (281 amino acids)

>Psest_2518 Predicted membrane protein (Pseudomonas stutzeri RCH2)
MPVTRLPLRWAAITLAAIVLPAPAHAHGLFDAHLLDRAPLLLTAVLVAAAWLLYALGARK
VPPRRSEALCFHSAMLLVVFSVFGPIDDWAESSTSWHMTQHMLFIIVIAPLWALARPLPQ
WRGVTGRFAQPVWTGILRAGRYPTLLALLHGAIIWIWHTPKLYVLALDNLWWHAFEHACF
LFTGWLFWWSVLRANPKQVPQALMAVLLTLMHTGLLGALLTFGNVSFYGEGRAVEDQQLA
GLIMWVPGGLIYLIGGGWIAWRWLTRMWRRQQTGAAREELG