Protein Info for Psest_2507 in Pseudomonas stutzeri RCH2

Annotation: Flagellin and related hook-associated proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF00669: Flagellin_N" amino acids 5 to 141 (137 residues), 168 bits, see alignment E=1.3e-53 PF00700: Flagellin_C" amino acids 311 to 393 (83 residues), 99.2 bits, see alignment E=1.3e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNY9 at UniProt or InterPro

Protein Sequence (394 amino acids)

>Psest_2507 Flagellin and related hook-associated proteins (Pseudomonas stutzeri RCH2)
MALTVNTNIPSLNTQRNLNSSSNALATSMQRLSTGSRINSAKDDAAGLQIANRLTSQVNG
LGVAVRNANDGISLAQTAEGALQQSTNILQRMRDLALQSANGSNSTSEREALNSEVGQLK
KELDRISNTTTFGGRQLLDGSFGVASFQVGSAANEIISVGIAEMSSKSLSAKFFENTSPK
AAVATTVTTAGEIDVGFTVNGKAYAVTANVAVGDDEKTVNQKIAAAINDTNSGVGAFVKD
DNTLSIVSRETEAGANSLSALSIAISTTAGKIPAGVTNPAAATLAATATSQKVSGVDLLS
AENAQKAVLVFDKAIQAIDAQRADLGAVQNRFDNTIANLQNISENVSAARGRIEDTDFAA
ETANLSKNQILQQAGTAILAQAKQLPQAVLSLLQ