Protein Info for PGA1_c24820 in Phaeobacter inhibens DSM 17395

Annotation: phenazine biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 1 to 287 (287 residues), 144.4 bits, see alignment E=2.5e-46 PF02567: PhzC-PhzF" amino acids 8 to 285 (278 residues), 125.6 bits, see alignment E=1.5e-40

Best Hits

KEGG orthology group: K06998, (no description) (inferred from 73% identity to sil:SPO0897)

Predicted SEED Role

"Phenazine biosynthesis protein PhzF" in subsystem Phenazine biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DSW4 at UniProt or InterPro

Protein Sequence (293 amino acids)

>PGA1_c24820 phenazine biosynthesis protein (Phaeobacter inhibens DSM 17395)
MRYDFDWVDAFSARAFGGNGCAVVHGGAELSDETCMAYVRETSLVECTFTGPSEVADVRV
RYFLASREIPFAGHPTIATVAALRDRGLMTEDTITLETGAGLVRVTVVDGLIEMTQVAPE
FGAFADPELVAAAVSLPVDAIVGQPQRVSTGLPFCITVLRDRASLEAAQLDIPALTWLGE
TMGAEGIDMMEPFLVTLDGATAEGDTFSRLLMAPPSPPEDPFTGSATGAMAAYLWRHGLM
ASDQFIAEQGHGLGRPGQAVVTRVGPAEAPSGIRVAGRGYVLMRGTVDLPDAS