Protein Info for PGA1_c24730 in Phaeobacter inhibens DSM 17395

Annotation: prolipoprotein diacylglyceryl transferase Lgt

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 227 to 243 (17 residues), see Phobius details amino acids 266 to 290 (25 residues), see Phobius details TIGR00544: prolipoprotein diacylglyceryl transferase" amino acids 6 to 292 (287 residues), 231.9 bits, see alignment E=4.9e-73 PF01790: LGT" amino acids 23 to 290 (268 residues), 239.7 bits, see alignment E=1.4e-75

Best Hits

Swiss-Prot: 76% identical to LGT_RUEPO: Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase (lgt) from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)

KEGG orthology group: K13292, phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC: 2.-.-.-] (inferred from 76% identity to sil:SPO0908)

Predicted SEED Role

"Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)" (EC 2.4.99.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.-.-.-

Use Curated BLAST to search for 2.-.-.- or 2.4.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EZ18 at UniProt or InterPro

Protein Sequence (300 amino acids)

>PGA1_c24730 prolipoprotein diacylglyceryl transferase Lgt (Phaeobacter inhibens DSM 17395)
MHAFFLQFPDLTPEIFTIELFGSQFALRWYALAYIVGIVIAWRLAVAALRRPTLWPGAQP
PMKAAQVEDLLTWIILGVILGGRLGYVLFYQPGYYLANPAEILRIWQGGMAFHGGLLGVI
LATWLYALRHNIPRLQIADLVAHTVPPGLLLGRLANFNNAELWGRATDLPWGVAFPGRAA
QSCGQALGEICARHPSQLYEALLEGLILGAVLLWLVYRRGALRQPGWITGVFLAGYGAAR
FVVEFVRQPDAQFVTVENPLGLAWQIGGYGLTMGQLLSLPMIAIGVFLVLRRRSTAEVPA