Protein Info for PGA1_c24620 in Phaeobacter inhibens DSM 17395

Annotation: putative secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 30 to 340 (311 residues), 190.5 bits, see alignment E=1.9e-60 PF13437: HlyD_3" amino acids 149 to 249 (101 residues), 45.1 bits, see alignment E=7.2e-16

Best Hits

KEGG orthology group: None (inferred from 61% identity to sit:TM1040_0630)

Predicted SEED Role

"Efflux transporter, RND family, MFP subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DSU5 at UniProt or InterPro

Protein Sequence (347 amino acids)

>PGA1_c24620 putative secretion protein (Phaeobacter inhibens DSM 17395)
MQLSLRAIAGIAALMLVGVPALAADVLKPVKLMVTQSGAMPIHREFYGQVAAKETVDLAF
QVGGQVVKFPVTEGAFVPKGALVAELDLEPFELKLGQAQLQKEQADRTVTRLEKLTGTVS
QVSIDDAETQAGLSRIALRDADYALEHATLNAPFDALVSSREVALFSTVSAGAPVVRLHD
MSELHIEVDVPEVLFQQGEDNDALTITATFPGSDTAYPLEILEFDAEASSVGQTYRVTFR
LDPPKDRQIFPGASTTVRVTVDTGASAIVVPPTAIVPAANGETGVMLFSPKGGDEGTVTW
TKVETAATDGGQIEITSGLQGGEEIVLTGGGALADGEAVRRFTGFTN