Protein Info for PGA1_c24610 in Phaeobacter inhibens DSM 17395

Annotation: integral membrane protein, AcrB/AcrD/AcrF family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1014 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 334 to 352 (19 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 386 to 409 (24 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 458 to 484 (27 residues), see Phobius details amino acids 518 to 538 (21 residues), see Phobius details amino acids 854 to 871 (18 residues), see Phobius details amino acids 877 to 897 (21 residues), see Phobius details amino acids 902 to 924 (23 residues), see Phobius details amino acids 951 to 1001 (51 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1001 (997 residues), 519 bits, see alignment E=1.2e-159

Best Hits

KEGG orthology group: None (inferred from 74% identity to sil:SPO0921)

Predicted SEED Role

"Transporter, AcrB/AcrD/AcrF family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F1F2 at UniProt or InterPro

Protein Sequence (1014 amino acids)

>PGA1_c24610 integral membrane protein, AcrB/AcrD/AcrF family (Phaeobacter inhibens DSM 17395)
MDIARGSINRPLYTWIIMLAALFGGIWGFLNLGRLEDPAFTIKQAVVITQYPGASAEQVA
LEVSEPLESAIQKMGEVKQITSMNQPGLSRIDVEMQDTFDGSELPALWTKLRSEIEDAAR
DLPEGVSTPFVNDGFGDVFGVFYAVTAEGYTDAERHELATFLRRELLAVDGVADVEIAGL
PEEAIFVEPKMAITVNQNIPIDAVSNALATANSVRSAGQVDNGPVQTRVSAPEGSDSVTE
IAGLTIGSQGEVINIIDMADVHRGRVDDPSQIIRFDGVEAFTIGIAGLATENIVEVGQRV
DARLAELDSQIPYGVELKPIYQQHVVVDQASNDFLVNLAMSVGIVVIVLAIFMGWRAAIV
VGTTLLLTVVGTLMFMNFFSIEMERISLGALIIAMGMLVDNAIVVAEGMQISMARGRSSR
EAAHEAAAKTQIPLLGATVIGIMAFAGIGLSPDSTGEFMFSLFAVIGISLLLSWLLALTA
TPLLAHYFFKQGSGDDHDAYSGILFRTYSKILRLSLKLRWFVVPGLIAITVLCFIGFGQV
KQQFFPNSNTPLFFVHYKLPQGSSITTTSEHMRVFEEWLADRNDVETVTTFVGQGATRFM
LTYDSEDPTPSYGHLIIRATSLEAIPALQADLEVFGQGRFPEGEFRTKRLVFGPGGGAPI
EVRFAGPDPRVLRQLGEEAMLRLQQATPDILSVRQDWREQEITLKPIYATDRAQTAGVTR
EAIADALQFSTDGLRAGVFRERDRLIPIVLRRAEAGEYNLMDQLVFSEAAGKFVPLEQMV
GGIDVVVENTLVHRRDRVPTLTVGADISADLTAASVFSQVQDTIEEIQLPAGYTMEWGGE
HENSADANASLGKQLPVTILIMVLISVLLFNAIRQPIIIWLLVPMSVNGVVIGLLGTGMP
FTFTALLGLLSLSGMLIKNGIVLVEEIDLVRAEGRPLREAIVEASVSRLRPVMLAAVTTI
LGMAPLLTDAFFVSMAITIMGGLAFATVLTLVAAPVFYLIFFGRDEKREQAATA