Protein Info for Psest_2431 in Pseudomonas stutzeri RCH2

Annotation: Transglycosylase.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1039 transmembrane" amino acids 36 to 56 (21 residues), see Phobius details PF00912: Transgly" amino acids 164 to 353 (190 residues), 74.4 bits, see alignment E=3.8e-25

Best Hits

KEGG orthology group: None (inferred from 93% identity to psa:PST_1931)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJL7 at UniProt or InterPro

Protein Sequence (1039 amino acids)

>Psest_2431 Transglycosylase. (Pseudomonas stutzeri RCH2)
MGAVWRSDKTSQDGRNKRAPTPKPSRKTAKGRRKVARRLALLVGISLLAGGGYLGWQELE
SSRWQAHWLSRYAADLDYTVMPGPSPRIQFPEDGPFDRRLGYVDLPRFIEQLSQRNFRVE
EQARFSRALLDYTSRGFFPPYPEESKAGLAINDCRGAPLYTNSYPRQYYERFEDIPPLVV
MSLLFIEDRGLLDTDRPNANPAVDWPRFTKAAISQLEKRLGLGGQAAGGSTLATQVEKYR
HSPEGRTGDPQEKIRQMVSASVRTYREGPQTLATRQRIVRDYLNSVPLSAAPGHGEVHGI
ADGLRLWFGADFREFNRLLDPRSGDAVDPQARGLALRQVLSLLIAQRRPSYYLGAGREEM
AALTDSHIRLLANGGIIDANLRDAALNQRIVARSPSRDSAIQTVDATKGITVARMRLAGL
LGLPLYDLDRLDLTASTPLQGDLQAQVSEYLVRLADPAFAETVGLFGDRMLSPEKTADVR
YSFTLFERGEEGFRVRVQTDNTNQPFDINEGSKLELGSTAKLRVLTTYLEVIAELHQRYS
DLTPAELRKIGAKANLSRWAIDYLATHSDRSLDRMLDAALERRYSASPAERFFTGAGMHR
FGNFRREDDGRIPTVRESLRESINLPFVRLMRDLVSYSTHETINSAELLNDDKDPRRQEY
LTRFADREGSVFLQRFWKKYRNKTAEQRIETFLQGMRPTPVRLAAVHRYLMPDAERPVFD
RFLKQHLPDADLNDKQLDALYTRYGPGAYSLPDQAYIARTHPLDLWLLGYLIANPQATLS
EVVADSRAERQEVYGWLFRSRHKSARDSRIRIMLEVEAFTDIHRRWQRLGYPFDNLVPSL
ATALGSSGDRPAALAELMGIILNDGIRLPSVRIDNLQFAEGTPYETRMGFVAGDGKRVMP
VEVARALQDALANVVEGGTARRLQGSFVQEDGSALRVGGKTGTGDNRIQSVGAGGRLISS
LALNRTATFVFYLGPRHFGTLTAYVPGRGAENFRFTSALPVQTLKGMAPILLPYLQGQST
LCQPEHLPALTSGMLSADK