Protein Info for Psest_2408 in Pseudomonas stutzeri RCH2

Annotation: Formate/nitrite family of transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 61 to 85 (25 residues), see Phobius details amino acids 105 to 129 (25 residues), see Phobius details amino acids 159 to 184 (26 residues), see Phobius details amino acids 194 to 218 (25 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details PF01226: Form_Nir_trans" amino acids 8 to 257 (250 residues), 227.2 bits, see alignment E=1e-71

Best Hits

KEGG orthology group: None (inferred from 97% identity to psa:PST_1953)

Predicted SEED Role

"Nitrite transporter from formate/nitrite family" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GNH7 at UniProt or InterPro

Protein Sequence (270 amino acids)

>Psest_2408 Formate/nitrite family of transporters (Pseudomonas stutzeri RCH2)
MSYIIPSEFVTKMVDAGESKIFMSTRDTLIRAFMAGAILSLAAVFAVAVTVQTGSPLVGA
MLFPVGFIMLYLMGFDLLTGVFMLTPLALLDRRPGVTVNGILRNWGWVFLGNFAGALVVA
FMMAFVFTMGFSTEPGPIGEKISHIGESRTLGYAEFGAAGWATIFLRGMLCNWMVSMGVV
GAMISTSVSGKVIAMWMPIMLFFFMGFEHSVVNMFLFPSAMIMGGDFSVMDYMVWNEIPT
ALGNLVGGLAFTGLTLYTTHVRTAPKRAVY