Protein Info for PGA1_c02460 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1225 PF22783: BapA_N" amino acids 26 to 96 (71 residues), 35.9 bits, see alignment 1.4e-12 PF17936: Big_6" amino acids 287 to 357 (71 residues), 27.7 bits, see alignment 6.6e-10 amino acids 768 to 838 (71 residues), 31.1 bits, see alignment 6e-11 amino acids 965 to 1029 (65 residues), 29.7 bits, see alignment 1.6e-10 PF19077: Big_13" amino acids 386 to 457 (72 residues), 28.5 bits, see alignment 4.5e-10 amino acids 483 to 553 (71 residues), 29.7 bits, see alignment 1.9e-10 amino acids 566 to 649 (84 residues), 34 bits, see alignment 8.8e-12 amino acids 656 to 746 (91 residues), 29 bits, see alignment 3.2e-10 amino acids 753 to 843 (91 residues), 36.5 bits, see alignment 1.5e-12 amino acids 965 to 1038 (74 residues), 37.6 bits, see alignment 6.5e-13

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EW00 at UniProt or InterPro

Protein Sequence (1225 amino acids)

>PGA1_c02460 hypothetical protein (Phaeobacter inhibens DSM 17395)
MSTVGYIVRDMAGTKQHGTSADTPQATIATATAKDISLNLGPSDVESYARRGQDLHITLI
DGQVVVLDDFFNTGATGNKNLFLSEEGNFVEVVLEDRTDGMLYASYEPLDLSGKWSAYDD
MVFLDVERIEPVVAPLVAPLLGGLGTAGAAAGVVGAAAIVGGGGGGGGGGGAVTPTVDNP
DATYPVAGSTTEDVVVSGTGAPGSTVEVTLGTITETVTVKDDGTWVANFPVTNLPPDGSY
ETTVYVKDPDGTEFNLDGPSVIIDTTPPPIAVNTVEGDDHINYIEVADGVVINGTGEAGA
SVSVEFQGVTRTTTVADDGTWSVNYSVNEVATGIYSSTIEVTSADSFGNTSTTTHTVDVD
TETRVTINTQVGNDHMISGAEQAAGITLTGTAEAGSSVVVTFQGVSRTVTADAQGNWSAS
YLSSEIATGTYDASVSAVATDTSGNTSSTSTSIPVDTETTASLDAVQAGDNVISAPEATS
GVTLTGKAEAGASVAVTLEGTTHTVTADAQGNWSADFASSEIPTGEYDANVSVTATDALG
NTASTTGTVRVDTETEVALSNPLAGDNLINAVEANNGLDLTGTAEAGASVVVQLGNATRT
VTANAQGQWTASFAGSDIADGTYDTTVTATATDAYGNTASASSQIHVDTTTSVGLDNGQA
GGDDVLNGAEAAGGLTLTGTAEAGASVAVTFQGITRTVTADAQGRWSAPYTTGEITPGEY
DAPISVTATDAAGNSESTTGTLRVDTSTAVSIDANQAGGDNIVNAAEAQAGVTLTGAAEP
GSAVEVTVAGVTRTATVAANGTWSALFEPGALAAGEYNTSVTVSATDAAGNTASASSALR
VDTVAGTVALSPDPIEIDDVINAVERADGVEISGTATPGLTVTVGLGAASRQVVADVNGD
WATTFPATEIPTGTQSLPITASIIDDAGNTASVSDTVALDTEVVPLTVQPNQTSDDIVNK
AEQIAGTTLSGTVEAGSTVAVTIGVVTNNATVDASGNWSVTFSDADLPDGTYTATATIRA
TDAAGNERSTVEQFSVDTEVGAATINTVTESSNGIVRLETLDATDNYSVNTLNPNGTMGS
PAASKTVDPIDGTEFRFGSAIPDGTHLVLSRNDAVGNTSSTLVVFDDNATNAGSLDHAAL
GQFNVDDLNLHYASDVSLTLNESAIKALSGNSDTLTIRGDNNDTITLAGGNAGGTRQIDG
ETFNVYTIGNDGTTLIVDQDVQVVL