Protein Info for Psest_2381 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF13609: Porin_4" amino acids 17 to 377 (361 residues), 106.7 bits, see alignment E=1.1e-34

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_1979)

Predicted SEED Role

"Outer membrane protein (porin)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJH1 at UniProt or InterPro

Protein Sequence (401 amino acids)

>Psest_2381 hypothetical protein (Pseudomonas stutzeri RCH2)
MHNNKKAVSTLLPLALASAIAMTVSQSAMAEIVLYDQNDTTFSTDGYFNTFYVHSDVERD
GEQFDRKQSRVKMGFLPNWIGFNFGKQVGDLKLGGRSSFWVTINDSDTNGTETGIDVRQF
YATAGNEQWGEVLFGKDFGLFGRSNILLDELLSGYGQVSDTLGLVDGGGVSFGNIGTGYP
YPFPTSQITYRSPKMSGLRIAAGIMDPVDTTEVSDPTVPGYDLDKAYQEAPRFETEVTYE
FELGGTQFYTWINGMQQSSDNTDSSIEKVDSKGLGYGVQAKMGNLSLTASGFQAEGINPF
FTNNANKALLREVDSDGYLLQGSYRFGKNRVALSYGKTKDDGNGLGNNAADFETRGIALF
HSINDNLTLVAELNQFEIEGRDTPALDEETRTFALGAALSF