Protein Info for Psest_2369 in Pseudomonas stutzeri RCH2

Annotation: Transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 155 to 173 (19 residues), see Phobius details PF00440: TetR_N" amino acids 15 to 61 (47 residues), 69.4 bits, see alignment 1.8e-23 PF08361: TetR_C_2" amino acids 89 to 192 (104 residues), 33.6 bits, see alignment E=4e-12

Best Hits

KEGG orthology group: K03577, TetR/AcrR family transcriptional regulator, acrAB operon repressor (inferred from 88% identity to psa:PST_1991)

Predicted SEED Role

"Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GM73 at UniProt or InterPro

Protein Sequence (206 amino acids)

>Psest_2369 Transcriptional regulator (Pseudomonas stutzeri RCH2)
MRRTKEDAEQTRLKIIAAALELFSRNGYSNTTLAMIAEAAGFSRGPIYWHFKSKDELYEA
VLAYSQEPLERLIEQSRERAADPRAALEHFISEWFRLLLDERWYRQSFEILLNKTELTAQ
MASTLKRERKLTRAMVQLLEELIAKVHEDERPARSLALLLYSSLMGITHTWLLSPKLFSL
REQAPCMALSLLALVKPGLTSDGLSQ