Protein Info for PGA1_c02440 in Phaeobacter inhibens DSM 17395

Annotation: putative ATP-binding/permease fusion ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 transmembrane" amino acids 244 to 265 (22 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 350 to 373 (24 residues), see Phobius details amino acids 379 to 397 (19 residues), see Phobius details amino acids 475 to 502 (28 residues), see Phobius details PF00664: ABC_membrane" amino acids 244 to 502 (259 residues), 70.3 bits, see alignment E=2.2e-23 PF00005: ABC_tran" amino acids 579 to 722 (144 residues), 102 bits, see alignment E=4.4e-33

Best Hits

KEGG orthology group: None (inferred from 69% identity to sit:TM1040_0529)

Predicted SEED Role

"Probable ATP-binding/permease fusion ABC transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EIM1 at UniProt or InterPro

Protein Sequence (788 amino acids)

>PGA1_c02440 putative ATP-binding/permease fusion ABC transporter (Phaeobacter inhibens DSM 17395)
MSNSNRPTDETVLRTVPPAPRAPDDAARVGGGKPVLRAVETQAAPHLAPASAAPAPPPGP
AAPPMAEVDLTGLLEDGDIGEVSALIEDATARIQHRAALIATFAALKGTNVALSDIAEHM
WRNDPGDVSVDSLARALQTTGMQAQINHQVLLTAESWPALAMMNNGQCVLVLSQSRDMLS
VYDTTCTDNRADVPVGEFGPYFTGTTLGARNSLKQIAARHTPQLESDHWFWGEFPKYRRQ
VGEIMLGSLVANILAVSVALFSLQVYDRVVPHQSHATLWVLAVGAFLAIMLEALLKLARA
RLTDAAGRQIELSVQNNLMRRLIGMRSDKKPLPPSGLFAAMRDFGSVREFFTSTTISTLA
DIPFIAVFLLLVASIAGPIVWIIIAGGILMLLPAYFMQKRMIALTRQTQGANAKAGRLLH
EVVNELDTLKSQRGEDRVLRLWDELNTLSTHAATEQRRLSSALTHWSQGVQQATYIGSVV
VGTLMVFAGEFTVGTIIATGILTSRTLAPLTQFAATLARWSNVKGALEGLDAIANSAQEK
EDERSYLRRDSLQGRFELREVMFRYDEDGAPTLDVPGVAVTPGQRVAVLGVNGSGKSTLL
KLMSGLYAPDRGRVMIDGTDMTQIDPRDLRRHIGYLSQDVRLFAGTLRENLNLNQLERDD
DRLMTALDFAGLGAHVRNHHKGLDLEIFDGGGGLSIGQRQSIGWARLWLQNPSIVLLDEP
TAALDQTLERTLVSRLETWLEGRTTVIATHRMPILSLTNRTLILQSGRMVVDGPRDQVLA
HLAAGETK