Protein Info for PGA1_c23420 in Phaeobacter inhibens DSM 17395

Annotation: Domain of unknown function.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1106 PF01697: Glyco_transf_92" amino acids 365 to 500 (136 residues), 58.5 bits, see alignment E=4e-20

Best Hits

Predicted SEED Role

"Glycosyl transferase, group 2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DSI3 at UniProt or InterPro

Protein Sequence (1106 amino acids)

>PGA1_c23420 Domain of unknown function. (Phaeobacter inhibens DSM 17395)
MSDLPVIASLWIGGNLSYLEQTCLKSFADHGHRTLLYTYETVDNCPPGVELMDANRIFPA
SDFIRHKVSGSPAVHADAFRYKMISMQNVIWVDADVLCVKPWDFQDQWVFGWEKTGRLVC
NAVLGLPRFSRTLQRLNAFCENEYPIPPWAKGEERAQLEAAHAAGNPVHVSELKWGVWGP
SALTHFLNETGEMAHVKPQMAFFQISFKERRNLLSPGYIVEKKIDDGCYGVHLWNRRLSR
RLITHEGGIPHPESYLGRALIRHDIDAAAAPIPDRPPEGKPTQAELAARAKASSPAATVS
PPAAEPTQHPRLTMPLDQLVQSPHYQRAIDNLELRIETIGDRLSPLPEPISNDNILILTS
MKNEAPFILEWIAYHKAIGAKHFLVYTNDCSDNTNEILDRLAELGLVTRVANPWDPTSGK
KPQHVALADAMQQPAYQAADWVLTIDVDEFVNIHVGDGRFADLFKAAGDPNVISLTWKFF
GNGGVADYEDRPITEQFTACAPEFIPKPRLGWGFKSMLHKSAPYTKIGVHRPLKIDDEEN
ISQVRWVNGSGRVMPEMLLTNNGWRSTKRSLGYRMATLNHYVLRSADSFLVKRDRGRINH
TEQDQGIDYWARRNYASETDARMHNRAPMMRAELDTLMADVKLASLHAEAVQWHKAKIAD
LKSRPEYAALYENLTEVARPDAIYLTKLEDQPEAGTPADVHIPEPEALLLSPDQIEAKIQ
LLKEMVQGKIRVADLRSREAELGVSMDVSDLAQKMQQTPRVAPAATPQKPTAARVVKVAP
VAPNPSDQQRLDHAPIWLPKAPDTTAPAAGDPRFTDMRAHAAQRAGFFWESDENALFFEP
FGKRLVVTFDNIHVVQQKEGQRWPWGYKLLSQTLGCSVLGVIGSKRNWFRSHFVHDSFDH
LRDSGFFDQFDEVLFYGASMGAYGALTYSQCAPGAKVLAIAPQTTLDRRILPDDDRWGWT
ARLDWDDRYADAAEATHLADDTVVLYDPYFDPDVQQVNRLKGDNIRKLRMPFFGHQLPQA
LVNMGILKPILSEIFEGRLTAQRFYQLLRARRDLPRFQHDLLMKAEENNHPKLAIQVCEY
TLKKRDAKNIRNSLDRLRADLAKAEG