Protein Info for HP15_2253 in Marinobacter adhaerens HP15

Annotation: Na(+)-translocating NADH-quinone reductase subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 PF05896: NQRA" amino acids 1 to 257 (257 residues), 373 bits, see alignment E=8.7e-116 TIGR01936: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit" amino acids 2 to 447 (446 residues), 583.3 bits, see alignment E=1.7e-179 PF11973: NQRA_SLBB" amino acids 262 to 310 (49 residues), 61.2 bits, see alignment 1.1e-20

Best Hits

Swiss-Prot: 70% identical to NQRA_HAHCH: Na(+)-translocating NADH-quinone reductase subunit A (nqrA) from Hahella chejuensis (strain KCTC 2396)

KEGG orthology group: K00346, Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC: 1.6.5.-] (inferred from 93% identity to maq:Maqu_1931)

MetaCyc: 58% identical to Na(+)-translocating NADH-quinone reductase subunit A (Vibrio cholerae)
TRANS-RXN-214 [EC: 7.2.1.1]

Predicted SEED Role

"Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)" in subsystem Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes (EC 1.6.5.-)

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.-

Use Curated BLAST to search for 1.6.5.- or 7.2.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PFU7 at UniProt or InterPro

Protein Sequence (448 amino acids)

>HP15_2253 Na(+)-translocating NADH-quinone reductase subunit A (Marinobacter adhaerens HP15)
MIKIKKGLDLPISGAPEQTITDGKPVRHVALIGFDYIGMKPTMAVKEGDRVKRGTLLFTD
KKTEGVRYTSPAAGVVKEINRGERRVFQSVVIEIDGDEAETFARYSEADLAGLERQQVVD
NLVESGLWTAFKTRPYSKVPEIDSAPHSIFVSVMDTNPLAADPTVIIGENSQAFEKGLTL
LTKLTTGKVFVTGKPGSNVAVPKSDAVEVHQFDGKHPAGNVGTHIHHLDPVSGSKTVWSI
NYQDVIDIAKLFESGEVPVERIVAIGGPKALKPRLVRTRLGASLEELLEGEVATDCEIRP
ISGSVFGGRRGDGPCAYLGRFANQVSVLEEGNKREFMGWLSPGPNRFSVLNIYLSKLTSG
KLFNFTTTTNGSERAMVPVGAYEQIMPLDILPTQLLRSLIVGDTEMAQKLGALELDEEDL
ALCTFVCPGKYEYGPILRENLTRIEIEG