Protein Info for HP15_2237 in Marinobacter adhaerens HP15

Annotation: ABC transporter metal-binding lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01297: ZnuA" amino acids 29 to 323 (295 residues), 188 bits, see alignment E=1.2e-59

Best Hits

KEGG orthology group: None (inferred from 60% identity to maq:Maqu_1892)

Predicted SEED Role

"Zinc ABC transporter, periplasmic-binding protein ZnuA" in subsystem Transport of Zinc

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PFT1 at UniProt or InterPro

Protein Sequence (332 amino acids)

>HP15_2237 ABC transporter metal-binding lipoprotein (Marinobacter adhaerens HP15)
MRVTGKALSIALGAGTLLFHSALQAETRIVTSIKPVELIVSAIATEDMQTTSLVPPGSSP
HNYTMKPSQRRALENADVIFWVGPDMETFLNRLLAGQEFSGRTVALMDAEHEPGEVTHDD
HAHDEHADDHHGHAHEEEAKEEEHHNEGHGHGHDHGEGEDPHIWLDPELAIEMAGTIRDA
LSGLEGVDAGALNENFEQFKASVRETDANIRDRLAPAREISLFAYHDAFTRFAEHYELKL
EGVLTLNPELSPGARHIAEVQEKLRNANHPCLLTEPQFNRQWWRSITESLDVTFSTWDPL
ATDIAATPEGYNNFQHSIVDAVLKCLPENTEH