Protein Info for PGA1_c23110 in Phaeobacter inhibens DSM 17395

Annotation: putative sugar ABC transporter, extracellular solute-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 PF13416: SBP_bac_8" amino acids 248 to 543 (296 residues), 73.6 bits, see alignment E=2.4e-24 PF01547: SBP_bac_1" amino acids 255 to 521 (267 residues), 97.4 bits, see alignment E=1.7e-31

Best Hits

Predicted SEED Role

"FIG00885034: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F121 at UniProt or InterPro

Protein Sequence (614 amino acids)

>PGA1_c23110 putative sugar ABC transporter, extracellular solute-binding protein (Phaeobacter inhibens DSM 17395)
MGNSDSSKMDISGGNRKAQSSQSARKKKLVPMNAMSRGNSARFTPPRAKTEMLQIIAFLE
ELGDELEDLVELSAPNPNLRMTLLLLRGHLEGRAITATALIGASRVPYATANRRLKDMLE
AGLIEQRPRTKTGKSFSMHPSEALLEQWAQLSNRVARLAAGHFGVRHKPGGDTGDYYFGE
SYMSAKSIPPLQVLSEPLKLAGGLRVLVHGDPTFMVMDNLKRQFEQSIGAQIHQRAFSID
RLHEEAVRNAERKASRYDIIAVDLPWVGEFAERQILMPLDEAMDLARLDPADFHTAGWQA
AHWGGRPYGVPAQTTPELLFYRKDLFAAAGLEPPATTDALLAAAKALHDPQSGQHGIAWN
AARGTALGHTVLMTLADFGQPVFDLPPIAGGFATDQLADRRYNVTIETDAGLRAAEFLLE
LLKYSPPDILSMSWYERVRPYAAGRIAMAYGYTLLAPYFELDEDSPANGQTGYLPHPAGP
GANPIAPVGGYIMGIPANLPPDRVPAAVEALRVFTSPEAQKLYVQNGSRTNPRYSVGADP
DVRRLSPVFEAVDAMSWRDELQFWPRPPVPEIAEIIQICGEEFHDMLRGLITPSETLRRA
QERADAVIKKHRST