Protein Info for Psest_0227 in Pseudomonas stutzeri RCH2

Annotation: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 77 to 98 (22 residues), see Phobius details amino acids 107 to 132 (26 residues), see Phobius details amino acids 175 to 201 (27 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details amino acids 260 to 285 (26 residues), see Phobius details PF11067: DUF2868" amino acids 150 to 447 (298 residues), 356.1 bits, see alignment E=1.1e-110

Best Hits

KEGG orthology group: None (inferred from 89% identity to psa:PST_4019)

Predicted SEED Role

"probable integral membrane protein NMA1899"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GDL3 at UniProt or InterPro

Protein Sequence (464 amino acids)

>Psest_0227 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific (Pseudomonas stutzeri RCH2)
MIARPAPDLDTLDRLWLTEAVRLREEHAGPLEDDEANRQARAQGGDLPALIERRALWLAR
RDGLIEALEHWRQGARLGGFVLALLAVFTGAGLAFAALGDGQRPVNVFWALGSLLGLNLL
TLLGWLLGLLFARDSGGALGRLWLWLSEKLARDARAAQLAPALLTILHRHRLGRWLLGVG
VHGLWLLAMASALLTLLALLATRRYGFVWETTILGESAFVGLTQALGALPALLGFSVPDV
EQIRASGALGGDLEGARQHWAGWLVGVLLIYGLLPRLLLAGFSLWRWRRGRAALKLDLSL
PAYRLLRERLQPPSERLGISDAAPAQLHAPSAGAQLDGSAGAVLVAIELDGSHSWPPALS
KGIADAGILDDREGRRRLLDQLTRFPPARLAIACDPRRSPDRGTLALLGELSRCAAATRV
WLLQAPPGEALDSARLDDWHQALDSLGLPHSSAAPLGWLESGHD