Protein Info for HP15_2194 in Marinobacter adhaerens HP15

Annotation: amino acid ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 27 to 53 (27 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 155 to 178 (24 residues), see Phobius details amino acids 190 to 217 (28 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 300 to 318 (19 residues), see Phobius details amino acids 328 to 346 (19 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 152 to 248 (97 residues), 70.4 bits, see alignment E=7.5e-24 PF00528: BPD_transp_1" amino acids 170 to 356 (187 residues), 86.4 bits, see alignment E=1.1e-28

Best Hits

KEGG orthology group: K09971, general L-amino acid transport system permease protein (inferred from 64% identity to rru:Rru_A1002)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PF78 at UniProt or InterPro

Protein Sequence (362 amino acids)

>HP15_2194 amino acid ABC transporter, permease protein (Marinobacter adhaerens HP15)
MMTESTMKAPKKALRPVKWMRENLFSGWFNTVLTLGVAYLLVTSVGPLLNWFFLDANFVG
SDPSACTGAGACWLFISQRLNFFIYGFYPDELQWRVDVMFLLLAVSFVPQFIERFPGRKW
LGLFGIFGLPIVGYFLIPGGSFGLEEVQSSKWGGLMLTLILAYIGIIASLPIGILLALGR
RSDMPIIRGICVVFIEVWRAVPLITVLFMASVMLPLFLPEGVNFEKLARALIGITLWQSA
YMAEVIRGGLQAIPRGQYEAADALGLGYWRKMGLVILPQALKMVIPGIVNTFISLFKDTT
LVLIIGLFDILGTVQSTVTDPAWQNVAIEGYVFVAFCFWVFCFGISRYSQNLERKLDTGH
KT