Protein Info for Psest_2236 in Pseudomonas stutzeri RCH2

Annotation: Rad3-related DNA helicases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 PF06733: DEAD_2" amino acids 269 to 389 (121 residues), 50.4 bits, see alignment E=3.1e-17 PF13307: Helicase_C_2" amino acids 591 to 752 (162 residues), 132.2 bits, see alignment E=3.1e-42

Best Hits

KEGG orthology group: None (inferred from 91% identity to psa:PST_2107)

Predicted SEED Role

"DinG family ATP-dependent helicase CPE1197" in subsystem DNA repair, bacterial DinG and relatives

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJ40 at UniProt or InterPro

Protein Sequence (759 amino acids)

>Psest_2236 Rad3-related DNA helicases (Pseudomonas stutzeri RCH2)
MSYRVAVRALCEFTAKVGDLDLRFTPSPTALEGIAGHAQVTARRGDGYEREITLEGQYGQ
LSVRGRADGYDPARNRLEEIKTFRGDLERQPANHRQLHWAQAKLYGWLLCQTRGLDELEL
ALVYFDVTSHKETLFVERHAAAALRAFFETQCQAFIAWAEQEMAHRAARDQALSNLRFPH
DDFRAGQRQLAEAVYKAACTGTTLMAQAPTGIGKTLATLFPQLKAFPGQQLDKLFFLAAK
TSGRKLALDALHTLRRSGAGELRVLELIARDKACEHPDKACHGESCPLARGFYDRLPAAR
AAALQHCMLDQATLRGVALEHEVCPYYLSQELARWADVVVGDYNYYFDISALLYGLTQSN
DWRACVLVDEAHNLLERARGMYSAELDQRTFVGLSSKAPAPLKRPLSRVQRCWNELHREQ
VATYQVQAELPLKLLGALQQAVSAITDYLGEQPTGLDADLQRAYFDAMHFCRVAELFGAH
SLFDVSLLPATARSKARRSILCLRNVVPAPFLAPRLAQARSSVLFSATLSPRRFHADMLG
LPAASAWIDVESPFQSRQLRVCLAGHVSTRYQDRQASLGAVVELVARQYLERPGNYLAFF
SSFDYLQQVTALLREHYPDVPFWEQTRGMQEAARNAFLERFTEHSEGIGFAVLGGAFAEG
IDLPGQRLIGAFVATLGLPQVNPVNEQFKTRLDELFGRGHGYDYTYLYPGLQKVVQAAGR
VIRTQQDEGVVHLIDDRFSRSQVRRLLPSWWALSGNSSG