Protein Info for PGA1_c21940 in Phaeobacter inhibens DSM 17395

Annotation: 50S ribosomal protein L33

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 55 TIGR01023: ribosomal protein bL33" amino acids 1 to 55 (55 residues), 78.5 bits, see alignment E=1.8e-26 PF00471: Ribosomal_L33" amino acids 7 to 53 (47 residues), 57.2 bits, see alignment E=8.4e-20

Best Hits

Swiss-Prot: 98% identical to RL33_RUEPO: 50S ribosomal protein L33 (rpmG) from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)

KEGG orthology group: K02913, large subunit ribosomal protein L33 (inferred from 94% identity to rsh:Rsph17029_0534)

MetaCyc: 64% identical to 50S ribosomal subunit protein L33 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F0T4 at UniProt or InterPro

Protein Sequence (55 amino acids)

>PGA1_c21940 50S ribosomal protein L33 (Phaeobacter inhibens DSM 17395)
MAKPTTIKIRLNSTAGTGHFYVTKKNARTMTEKMVVRKYDPVVRKHVEYKEGKIK