Protein Info for Psest_2187 in Pseudomonas stutzeri RCH2

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 686 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 33 to 48 (16 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 356 to 378 (23 residues), see Phobius details amino acids 384 to 401 (18 residues), see Phobius details amino acids 412 to 431 (20 residues), see Phobius details amino acids 437 to 455 (19 residues), see Phobius details amino acids 463 to 480 (18 residues), see Phobius details amino acids 487 to 506 (20 residues), see Phobius details PF04632: FUSC" amino acids 7 to 664 (658 residues), 602.7 bits, see alignment E=1.6e-184 PF06081: ArAE_1" amino acids 12 to 153 (142 residues), 29.5 bits, see alignment E=1.1e-10 PF13515: FUSC_2" amino acids 19 to 149 (131 residues), 58.8 bits, see alignment E=9.4e-20

Best Hits

KEGG orthology group: None (inferred from 77% identity to psa:PST_2120)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GL36 at UniProt or InterPro

Protein Sequence (686 amino acids)

>Psest_2187 Predicted membrane protein (Pseudomonas stutzeri RCH2)
MPTWREWLFSAKALIAALLALFIALAIPLENPYWAMASVYVVSHPLSGATRSKAIYRALG
TLLGAAASVVLLPTFAQQPLMLSLAISLWIGALLFLSLLDRSPRSYIFLLAAYTVPLISL
AEVNHPSTIFDVALARSEEILLGIVCASVVNAVLFPSRIAPTLAAKMHLLLRDGRGAVSR
MLNTQHLGEADQRALNALLVDVMGLDAMISHLGHDSSSHLSTVHAREFRARMAMLMPQLI
STADSLHRLQAELQGLLPELVDYLQQVDRWIQSDAEAGHGEHLRERSLQLAAWLGDSHPA
HALAIDSGLRQLGALIDLWQDCLDLYQQFHEGHPEAAPALRYHVQQLVGGPRHYDYGLLA
FTAASVALSVFCLSMLWFVSGWEHGYSGVFIAAVAGCFFASQDNPAPFIKSFLVATLISS
TAAGVYLFALMPNVHDFGSLAILLAVPLLLLGTLAGRPQHAGTVIVIAVQTISNITLQDS
YRADFQLFADIALSTALGVLFAFVWARLTRPFGTLWAARRLVRHGWLSLAALADLRRWRN
EADDASSFIDRIAQLLPRLAQLDDDRLALNDATRELRVGFRLLELRELRPAPAIEQKLEP
VLGMIRAHFLACATARSQLPAPEPLRDALEAALLDLQCDASPSAHRAAQVVHGLRLALFA
DASASVRAAPGGLPPAAGLSPAGAHA