Protein Info for Psest_2140 in Pseudomonas stutzeri RCH2

Annotation: Cation/multidrug efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1034 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 337 to 354 (18 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 452 (22 residues), see Phobius details amino acids 464 to 487 (24 residues), see Phobius details amino acids 529 to 548 (20 residues), see Phobius details amino acids 856 to 874 (19 residues), see Phobius details amino acids 881 to 901 (21 residues), see Phobius details amino acids 907 to 932 (26 residues), see Phobius details amino acids 953 to 973 (21 residues), see Phobius details amino acids 985 to 1011 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1011 (1006 residues), 1060.5 bits, see alignment E=0 PF03176: MMPL" amino acids 332 to 505 (174 residues), 28.8 bits, see alignment E=9.3e-11 amino acids 774 to 1014 (241 residues), 23.7 bits, see alignment E=3.4e-09

Best Hits

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 73% identity to avn:Avin_28790)

Predicted SEED Role

"AcrB/AcrD/AcrF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMX4 at UniProt or InterPro

Protein Sequence (1034 amino acids)

>Psest_2140 Cation/multidrug efflux pump (Pseudomonas stutzeri RCH2)
MNLSAPFIARPVATMLLSLAILLLGGVSFGLLPVSPLPNMDFPVITVQASLPGASPEIMA
SSVATPLERSLGSIAGVSQMTSRSSQGSTRIIIQFDLDRDINGAARDVQAAINASRNLLP
SGMRSMPTYRKINPSQAPIMVLSLTSEVLDKAELYDIGSTILAQKLSQVSGVGEIQVGGS
SLPAVRVELQPQQLEQYGVSLDEVRQTIANGNVRRPKGMVEDADQHWQVRANDQLHQAAD
YTPLIIRYQDGAALRLGDVARVRDSVEDRYNSGFFNNEQAVLLIVNRQAGANIIETIEGI
RRELPALQAIMPGSVDLNIAMDRSPVIRATLHEAERTLLIAVGLVIVLVFLFLGRLRTAL
IPALAVPVSLVGTFAVMYMFGFSLNVLSLMALILAAGLVVDDAIVVLENIARHIDDGMPP
LKAAYVGTREVGFTLLSMNLSLVVVFVSILYMGGIVERLFREFSITLAAAILVSLLVSLT
LTPMLCARWLKPHEPEKEGRLQRWSHDAHQWLLRYYDRSLSWALRHRRITLLSLLATIAL
NVVLYVQVPKTFLPQQDTGQITGFIRGDDGMSFQVMQPKMEIFRKAVLADPAVESVAGFI
GGQGGINNAFMIVRLKPLNERGISAQKVIERIRKNQPKVPGGRMFLMADQDLQFGGGRQS
SSAYAYTLLASDLNDLRTWVPQVTRALSDLPELTSIDANDGEGAQQISLKIDRDAAKRLG
IDMSTVTTLLNNAFSQRQISTIYESLNQYQVVMEIDPSYAQYPEVLEQIHVVTSDGRRVP
LAAFARYERSLEEDRVSHDGQFAAENIDFDLAPGVSLDQATLAIERAVAAIGMPSEVQGR
LGGTGSAFQTTQEGQPLMILGALLLVYIVLGILYESYIHPLTILSTLPSAGVGALLAIIL
TGDQFSLISLLGLFLLIGVVKKNAILMIDLALQFERQDKLSPADSIHRACLLRFRPILMT
TMAAILGALPLLLGGAEGAEMRQPLGLTIIGGLLLSQILTLYTTPVVYLYLDRLRHRFNS
WRGVRTDAALENSL