Protein Info for Psest_0208 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 72 (27 residues), see Phobius details amino acids 82 to 96 (15 residues), see Phobius details amino acids 110 to 134 (25 residues), see Phobius details amino acids 141 to 164 (24 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 237 to 255 (19 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 320 to 344 (25 residues), see Phobius details amino acids 356 to 380 (25 residues), see Phobius details amino acids 388 to 409 (22 residues), see Phobius details amino acids 412 to 445 (34 residues), see Phobius details amino acids 464 to 488 (25 residues), see Phobius details PF01970: TctA" amino acids 20 to 440 (421 residues), 515.5 bits, see alignment E=4.6e-159

Best Hits

KEGG orthology group: K07793, putative tricarboxylic transport membrane protein (inferred from 99% identity to psa:PST_4038)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHM6 at UniProt or InterPro

Protein Sequence (504 amino acids)

>Psest_0208 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
METLNFLMQGFDVATRPTNLLVALFGAFVGTIVGLLPGLGPINGVALLLPLAFALGLPPE
TALILLAAVYLGCEYGGRISAILLNVPGDAAAVMTTLDGYPLARQGKAGIALSLSAVSSF
VGSTIATCGVVLFAPLLAKWAVAFGPAEYFVLMIFAIACLGGMVGDKPVKTLMAALMGLA
LATVGVDSTTGVYRFTFGSVSLSDGIQFVIVVIGFFSVSEILLMLEKTHSGQKAVKASGR
LLFNFKEFCLTFWTMVRSAVAGFVIGTLPGAGATIASAMTYMSEKRMAGDKGRFGDGDLR
GLAAPEAANNASACGSLIPMLTLGVPGSGTTAVMIGALTLYNITPGPLLFEQQPDVVWGL
IASLFIGNVILLVMNIPLVGLFSRMLSVPNWVLVPTITVISMVGVYSVHSTVFDLVLMVG
LGVFGYLLRKLDFPLSALILGFVLGEMMEDNLRRALSISNGELGILYGSPITLALWALTV
AMLAMPGLRWYLKRRRGNVVEAQA