Protein Info for Psest_2095 in Pseudomonas stutzeri RCH2

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 201 to 221 (21 residues), see Phobius details amino acids 241 to 262 (22 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 297 to 318 (22 residues), see Phobius details amino acids 329 to 350 (22 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details

Best Hits

Swiss-Prot: 45% identical to Y1221_YERPE: Uncharacterized MFS-type transporter YPO1221/y2967/YP_0917 (YPO1221) from Yersinia pestis

KEGG orthology group: None (inferred from 90% identity to psa:PST_2230)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GMS8 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Psest_2095 Arabinose efflux permease (Pseudomonas stutzeri RCH2)
MSAVRNTVQIDTPIVRNATRCGFFMAGFGLSVWAPLVPYVRERIEMTDAVFGLLLLCIGV
GSLTWMPLSGVLVGRWGIRPVQLCSVVLLALALAGMALTESMWLLALALFCFGGSLGVID
VIMNIQAVLVETAVGRRLMSNFHGMYSLGAISGALIFTGLLTLGLAPEIGSFLMIGLIVV
ANLGLARGFLPNRAPGGGFAFVRPTAIVLLVGLMCFVVYLAEGAVLDWSALYLTGKKGLE
VAKGGLGYAAFALMVTIARFAGGPLVNALGTARVIAFGGLVAAFGIVLSLAAEHWAVALI
GYGLCGLGCANVSPVLISSLSRQDGMPVQLAVTVATTIGFAGVLAGPAMMGVVAHFSSLG
MAFALLAVLLVGIVPFCRRFTA