Protein Info for HP15_2007 in Marinobacter adhaerens HP15

Annotation: prophage lambda integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 PF09003: Arm-DNA-bind_1" amino acids 1 to 63 (63 residues), 54.6 bits, see alignment E=9e-19 PF00589: Phage_integrase" amino acids 185 to 359 (175 residues), 40.3 bits, see alignment E=3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PQQ1 at UniProt or InterPro

Protein Sequence (373 amino acids)

>HP15_2007 prophage lambda integrase (Marinobacter adhaerens HP15)
MAPRKRLKKNKDLVENLYGSTKNGVTYYQYKHPVTGQYHSMGTNKQEANAAARQLNSILI
PERNLVAQVMGTADKDINHLIYRYRKELLPTKGLASGTEKILDYRLKRIERDLGNKLIDE
MDVQTVAEYLDDNFERDAYIKHRATLIELFRFAINKGLYPLEMSNPAEVTYAKSEYEKAR
RRLTLEQFWEIHAKAEPWMQNAMEIALITLQGRAEVINMKFSDYQDKVLKVVRQKSSKHE
HSHLMIHCPQLEEIVTRARQSKIASPYIIHRRPERKVEAEGRDHWTKLTPNTFTAEFRKT
RDKCESFKNVPRQHRPTFHEIRALGSWLYKKQGFDNETYIQPLMAHADGKMTEHYQQGHE
QRWVKVEAGLKIK