Protein Info for HP15_1962 in Marinobacter adhaerens HP15

Annotation: capsid protein of prophage

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 PF03864: Phage_cap_E" amino acids 3 to 334 (332 residues), 212.4 bits, see alignment E=4.9e-67

Best Hits

KEGG orthology group: None (inferred from 48% identity to hch:HCH_02898)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PQ46 at UniProt or InterPro

Protein Sequence (339 amino acids)

>HP15_1962 capsid protein of prophage (Marinobacter adhaerens HP15)
MTYSTTELLDGTRRLDPFMPFLLNLFCPGFVTFGTKEIAFDAWDEDFKLAPFVSPYVPGQ
VSQQPGGELRKFIPPYLKPKDVVSPDRVLERRPGEGFSGPLTPEERADAIRMDLLATHRK
KIRRREEWILSQVLLTGQVVVSGPRYPEKLLDFRRDPNLTIDISGGAGAWNQTTAKPVED
FQDWFELLESPATHVFFGPGTLRAAFRDEEFKDLAETRRGSESRFEMAPAELDASYAGRF
RENGAELWEYKGWYKDAQGNKQYFIPYGHIVIAGVAGASGVRTYGAILDANAQYQEAEMW
PKNWPDNDPGVEYIMTQSGPLPVLRRIDATLCAKVLPTP