Protein Info for PGA1_c20110 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 52 (23 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 156 to 173 (18 residues), see Phobius details amino acids 182 to 200 (19 residues), see Phobius details amino acids 216 to 247 (32 residues), see Phobius details amino acids 256 to 281 (26 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 341 to 367 (27 residues), see Phobius details amino acids 394 to 419 (26 residues), see Phobius details amino acids 451 to 476 (26 residues), see Phobius details amino acids 497 to 519 (23 residues), see Phobius details amino acids 530 to 547 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7F0C9 at UniProt or InterPro

Protein Sequence (548 amino acids)

>PGA1_c20110 hypothetical protein (Phaeobacter inhibens DSM 17395)
MNPIVVTILAGIIVAALQIGHQEKHISVSVIYWTAGFAALFLFAYSIALFSYRSIGTEGF
TRFCRENRLAEVYRNLLKSALDRLDRWLCPPEYLDQSSPDLVQPPHPKRAWNWRAYDLML
LLAVAYPVGLPMFIWLLTGAPAELGGVPLLNAPEQWWSIPLAWGALSVLIFHHRIAGKLH
TALIWPGVNVLFRAILARPAPPELGLGLVQGALLVAGAGAGAGAVAVAGAVAVAVAGAVA
VAVAVAVAGAGAGAGAGAVAVAGAVAVAVAVAVAGAVAVAFAGAGAVAVAGAVAVAVAGA
VAVDLAAKKQRFAGAIYCLVSLALYGGLFTAVAFAEDALTGTAALLLLFLGLFPLINAFW
DFLSLGLTRWCLRQSLPKTPLKVRFLRIPMVRPMVFSLLDLMGACLTLIGLILSLLLGVS
LMNSLAHEPILPLRQLMQDLQPGSGGPDMTWAYLMVFSTFLPSALHFLLFLTSLALRFPG
PWKHWLTPDQTLEPETAATLAALWVTLPVAAISLGAWYLWPALPLWHDNTLTWLLALIST
LIEVGGLS