Protein Info for HP15_1923 in Marinobacter adhaerens HP15

Annotation: PEP-CTERM locus polysaccharide chain length determinant

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 526 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 416 to 440 (25 residues), see Phobius details amino acids 480 to 504 (25 residues), see Phobius details TIGR03007: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily" amino acids 15 to 499 (485 residues), 336.6 bits, see alignment E=9.2e-105

Best Hits

KEGG orthology group: None (inferred from 36% identity to hch:HCH_02716)

Predicted SEED Role

"Lipopolysaccharide biosynthesis chain length determinant protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PQ07 at UniProt or InterPro

Protein Sequence (526 amino acids)

>HP15_1923 PEP-CTERM locus polysaccharide chain length determinant (Marinobacter adhaerens HP15)
MDLQFILDTLRAIKRELYRYRVSAAIVFMLATAGVLGWGYVTPKTYTSEALLYADQSNIL
EPLLRGQAEVTQIDRINEARELVESRSFLEQIALDSELLTGAESDQDKNVAISGLRKQIS
LRVSNRNFLELSYSSKDPNQSFTVLSSVLDRFIERTINKKQGESQAAFEFIDSQVKSYQR
QLEEAEQKLKVFKSNNQDGTEGNVRGRIENLRAEIENLKLQIQQTESEVRLTQQQLSQEE
PVRRVTVDPGRSAAERRLVALRQELDELLLRYHERHPDVVSIKGQIGDLEQQVSTQSDDS
REGSVTEVLENPVYENLKMRLSEGRTDLEVQRNRLASLERLLEEAFARAERVAENQAQLS
ELTRDYDVTRDVYEDMLQRRERARLSMTLDVQGEGVSYKIQEPATFPTQWDGLQLYQIGL
AGPFLGSALVLGLITALVMFDQRIRSPRELHLALPESIPVIGTIPHYRSTWKDRLLRKDV
LLLLSILGVFITAYLAVLVFSVMGISPERIMSKLAEIFGAGVGNGR