Protein Info for PGA1_c19960 in Phaeobacter inhibens DSM 17395

Annotation: putative metalloprotease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details PF01435: Peptidase_M48" amino acids 37 to 221 (185 residues), 91.8 bits, see alignment E=2.5e-30

Best Hits

KEGG orthology group: None (inferred from 84% identity to sit:TM1040_0890)

Predicted SEED Role

"Peptidase, M48 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DRI7 at UniProt or InterPro

Protein Sequence (230 amino acids)

>PGA1_c19960 putative metalloprotease (Phaeobacter inhibens DSM 17395)
MLRLTPILLAVIYGLVMYRLSIWRTHRALDEQSTELADARLRQLTDSMAAALEISHIPVY
IYEVDPVNGLAAPDGRIFITRGFYRKYRSGEVSDAELASVIAHELGHVALGHAKKRMIDF
SGQNALRTALMLIIGRFVPFVGPWIANVLTSLLAARLSRGDEYEADEYAAALLTKSGIGT
APQKSLFRKLEELTQARSGLAPAWLMSHPKTEERIAALDRLEAKWDSPKG