Protein Info for Psest_0197 in Pseudomonas stutzeri RCH2

Annotation: TRAP transporter, 4TM/12TM fusion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 63 to 80 (18 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 119 to 136 (18 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 217 to 233 (17 residues), see Phobius details amino acids 239 to 263 (25 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 432 to 453 (22 residues), see Phobius details amino acids 460 to 480 (21 residues), see Phobius details amino acids 512 to 538 (27 residues), see Phobius details amino acids 544 to 565 (22 residues), see Phobius details amino acids 572 to 590 (19 residues), see Phobius details amino acids 595 to 628 (34 residues), see Phobius details amino acids 640 to 661 (22 residues), see Phobius details amino acids 668 to 687 (20 residues), see Phobius details amino acids 698 to 717 (20 residues), see Phobius details amino acids 828 to 844 (17 residues), see Phobius details TIGR02123: TRAP transporter, 4TM/12TM fusion protein" amino acids 26 to 721 (696 residues), 691 bits, see alignment E=8.6e-212 PF06808: DctM" amino acids 133 to 356 (224 residues), 162.9 bits, see alignment E=1.2e-51 amino acids 392 to 665 (274 residues), 95.9 bits, see alignment E=2.4e-31 PF11874: DUF3394" amino acids 671 to 849 (179 residues), 240.1 bits, see alignment E=1.3e-75

Best Hits

KEGG orthology group: None (inferred from 97% identity to psa:PST_4049)

Predicted SEED Role

"TRAP-type uncharacterized transport system, fused permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GDI3 at UniProt or InterPro

Protein Sequence (850 amino acids)

>Psest_0197 TRAP transporter, 4TM/12TM fusion protein (Pseudomonas stutzeri RCH2)
MQDKQLSTEELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFVLGFGVLNDTE
TRSIHLAFALLLAFLAYPAFKRSPRDRVPLVDIALGLVAAASAAYLFIAYSQLAQRPGNL
TTMDLVTACIGIPLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALAN
HQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAV
VASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAA
FLMVEYVGIPYVEVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLIG
FVFGAALISGLSLGVYYGLGWLKPLLGDSALWVIGALLAVVYLGLLKIAASNPPLPHEDP
NMPLEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLL
SWMRHDRSHPDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLAD
LVELLSMGNLLLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIA
VHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDL
LLIGVDFWHGVLIFIVATIAMLVFAAGTQGYFLVRSRWYESVLLLLVAFTLFRPGFWMDM
IHDPYQEIPPAQLVEALGNVDEDSQLRLRVLGEDAVGDPREFVLLLAIPDGASGEEKLEK
IGLLTYEEDGKLLVDSVTFGSPAAEAGLEFDQQILSVRAPTDRWPKELMWAPGFLLFALI
VWMQRRRRQR