Protein Info for PGA1_c01990 in Phaeobacter inhibens DSM 17395

Annotation: glutamate/glutamine/aspartate/asparagine transport system permease protein BztB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 25 to 44 (20 residues), see Phobius details amino acids 89 to 116 (28 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 193 to 215 (23 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details amino acids 352 to 370 (19 residues), see Phobius details amino acids 380 to 401 (22 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 89 to 151 (63 residues), 47.9 bits, see alignment E=8.1e-17 PF00528: BPD_transp_1" amino acids 245 to 400 (156 residues), 47.8 bits, see alignment E=7.1e-17

Best Hits

KEGG orthology group: K09970, general L-amino acid transport system permease protein (inferred from 60% identity to sit:TM1040_0295)

Predicted SEED Role

"Glutamate/glutamine/aspartate/asparagine transport system permease protein bztB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ETE9 at UniProt or InterPro

Protein Sequence (410 amino acids)

>PGA1_c01990 glutamate/glutamine/aspartate/asparagine transport system permease protein BztB (Phaeobacter inhibens DSM 17395)
MSTLTDPPKAQFQLSMLVNDTRYRSLTFQAIAALVLALAIWYLGNNLIQNLRAAGLNISY
GFLGDPSGYDINQRLIEYDSQSSHARAAVVGVLNTLLVAVLACITATIFGVVAGVLRLSN
NWLVSKLMAVYVEIFRNIPVLIWIIIIFTIMTAVMPGPREFRGDNATSSMLFDLFAFTNR
GVYIPMPWFESGFFASGALNWLVVIAALVGSFLVMRRIEANATKTQEKTGVRPKTKLIAL
GVWLVPLALVLFVMGLSWEVPELKGFNFKGGIKIGGPLIALWFALSIYTGAFIAENVRAG
IQAINKGQTEAAAALGLRPGRIMNLVVLPQALRVIIPPLISNFLNITKNSSLAIAVGYAD
ITATLGGITLNQTGRAIECVLLLMLFYLTASLLISMVMNVYNASVKLKER