Protein Info for PGA1_c19760 in Phaeobacter inhibens DSM 17395

Annotation: ABC transporter, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 617 PF00005: ABC_tran" amino acids 18 to 175 (158 residues), 79.5 bits, see alignment E=9.6e-26 amino acids 326 to 456 (131 residues), 65 bits, see alignment E=2.9e-21 PF12848: ABC_tran_Xtn" amino acids 214 to 293 (80 residues), 96.6 bits, see alignment E=1.9e-31 PF13304: AAA_21" amino acids 420 to 488 (69 residues), 27.7 bits, see alignment E=6.4e-10

Best Hits

KEGG orthology group: K06158, ATP-binding cassette, sub-family F, member 3 (inferred from 77% identity to dsh:Dshi_1349)

Predicted SEED Role

"ABC transporter ATP-binding protein uup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DRG9 at UniProt or InterPro

Protein Sequence (617 amino acids)

>PGA1_c19760 ABC transporter, ATP-binding protein (Phaeobacter inhibens DSM 17395)
MLRISDISYAVEGRLLFDGASATIPTGHKVGLVGRNGTGKTTLFRLIRNELSLESGSISL
PSRSRIGGVAQEAPASDVPLIETVLAADTERAELLAESETAQDPNRIAEIQTRLSDIDAW
SAEARAASILKGLGFDYEAQQRPCSDFSGGWRMRVALAAVLFSQPDLLLLDEPTNYLDLE
GALWLEAYLVKYPHTVIIISHDRELLNRSVNGILHLEELGLTYYSGNYDQFARQRAANRA
NQAAQAKKQDARRAHLQAFVDRFKAKASKAKQAQSRVKMLEKMETIRAPEDAARTVFTFP
EPEELSPPIIATEGASVGYDGTTILSRLDLRIDQDDRIALLGKNGEGKSTLSKMLSGRLG
VMTGKMTQSSKLRIGFFAQHQVDELHIDETPLQHLQRERPNEGQARLRARLAGFGLGSDQ
ADTEVGRLSGGQKARLSLLLATLPAPHLLILDEPTNHLDIESREALVEALTAYSGAVILV
SHDMHLLSLVADRLWLVSGGTVKPYEGDLPSYRDLLLTRDKPAGKSKTKAEKPKRPSRDA
LLALRAEVRKGEARLEKVSEMRDKLAKKLADPALYDEERKDEAVVWQRKYAEVMEAQDRA
EDLWLKAVEKLEKAEAL