Protein Info for PGA1_c19220 in Phaeobacter inhibens DSM 17395

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 288 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 32 to 57 (26 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 165 to 187 (23 residues), see Phobius details amino acids 199 to 220 (22 residues), see Phobius details amino acids 232 to 254 (23 residues), see Phobius details amino acids 266 to 283 (18 residues), see Phobius details PF01925: TauE" amino acids 28 to 281 (254 residues), 171.3 bits, see alignment E=1.4e-54

Best Hits

KEGG orthology group: None (inferred from 83% identity to sil:SPO2354)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DRB9 at UniProt or InterPro

Protein Sequence (288 amino acids)

>PGA1_c19220 Predicted permeases (Phaeobacter inhibens DSM 17395)
MSALTTSLVTTAALLPEPAVLAQMGGLLIVTGAVAGVLAGLLGVGGGIVLVPAFFYVFQT
LGYGGDQLMQMCLATSLATIIVTSLRSVMSHNKKGAVDWDILRGWGPGIAIGAIIGVMVA
SSLRSTTLQALFGVLALVIGCYMAFGRADWRLGSAMPKGARRMILSPMVGFLSVLMGIGG
GSFGVPLMSLHATPIHRAVATAAGFGVIIAVPSVIGFLFLPVDPSVRPPLTVGAVNLVAF
VVVIAMTLITAPWGVKLAHAMDPKPLKRVFAVFLILVALNMLRKSLGF